Journal of Proteomics & Bioinformatics
Open Access
ISSN: 0974-276X
ISSN: 0974-276X
Maria Karpova
Institute of Biomedical Chemistry,
119121, Pogodinskaya str., 10, Moscow
Serbia
Research Article
Clustering Mass Spectral Peaks Increases Recognition Accuracy and Stability of SVM-based Feature Selection
Author(s): Mikhail Pyatnitskiy, Maria Karpova, Sergei Moshkovskii, Andrey Lisitsa and Alexander ArchakovMikhail Pyatnitskiy, Maria Karpova, Sergei Moshkovskii, Andrey Lisitsa and Alexander Archakov
Mass spectral profiling of serum or plasma is one of the tools widely used to make experimental diagnostic systems for different cancer types. In this approach, a set of discriminatory peaks serves as a multiplex cancer biomarker. Hence, adequate selection of peaks is a crucial stage in the development of diagnostic rule. In the present paper we propose using sequential filter and wrapper feature selection in a complete cross-validation scheme with feature selection performed at each run of crossvalidation separately. Filter feature selection is represented by hierarchical cluster analysis; recursive feature elimination coupled with support vector machine is utilized as a wrapper feature selection method. The method performance is demonstrated on previously obtained dataset with ovarian cancer and non-cancer sera. Application of our approach led to a slight but statis.. View More»
DOI:
10.4172/jpb.1000120