Journal of Proteomics & Bioinformatics
Open Access

Christopher Gerner

Publications

• Research Article
  GPDE: A Biological View on PRIDE
  Author(s): Johannes Griss and Christopher GernerJohannes Griss and Christopher Gerner
  
  Clinical proteomics are unthinkable without the extensive use of meta-analysis. By the development of the Proteomics Identification Database Engine (PRIDE) extensive markup language (XML) data format in 2005 a standardized data format for proteomics data publishing was created. Here we present the Griss Proteomics Database Engine (GPDE, http://www .griss.co.at/?GPDE ): an open sour ce web-based bioinformatic tool that uses the possibilities of this standardized data format to create biologically-based meta-analysis over an unlimited number of proteomics experiments. Its aims are (1) to be fully compatible with the PRIDE XML data schema, (2) to integrate the data of different experiments or projects based on specially defined “cell types” thus dissolv- ing the “borders” between.. View More»
  DOI: 10.4172/jpb.1000074

  Abstract PDF

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