Journal of Data Mining in Genomics & Proteomics

Roger S Holmes

Publications

• Review Article
  Comparative and Evolutionary Studies of Mitochondrial and Cytoplasmic Pyrophosphatase (PPA) Genes and Proteins
  Author(s): Roger S Holmes, Kimberly D Spradling-Reeves and Laura A CoxRoger S Holmes, Kimberly D Spradling-Reeves and Laura A Cox
  
  Inorganic pyrophosphatase (PPA; PPase) (EC: 3.6.1.1) is a member of the diphosphatase enzyme family which functions as a diphosphate hydrolase within the cytoplasm (PPA1) and mitochondria (PPA2) of vertebrate tissues. PPA1 and PPA2 amino acid sequences and structures and PPA-like gene locations were examined using bioinformatic data from several genome projects. Sequence alignments and key conserved amino acid residues were also studied (human PPA2 residues identified): the mitochondrial signal peptide (1-31); and active site residues responsible for Mg2+ binding (164Asp, 169Asp and 201Asp), substrate binding (127Arg) and serving as the proton donor site (138Tyr). Predicted 2D and 3D structures were identified for vertebrate PPA1 and PPA2 using the reported yeast PPA1 structure (PDB: 1E9G). Vertebrate PPA1 and PPA2 genes usually contained 11 or 12 coding exons, respectively, with an e.. View More»
  DOI: 10.4172/2153-0602.1000205

  Abstract PDF