Journal of Data Mining in Genomics & Proteomics

Nitin Kumar Singh

Publications

• Research Article
  Genome Mining and Comparative Genomic Analysis of Five Coagulase- Negative Staphylococci (CNS) Isolated from Human Colon and Gall Bladder
  Author(s): Ramesan Girish Nair, Gurwinder Kaur, Indu Khatri, Nitin Kumar Singh, Sudeep Kumar Maurya, Srikrishna Subramanian, Arunanshu Behera, Divya Dahiya, Javed N Agrewala and Shanmugam MayilrajRamesan Girish Nair, Gurwinder Kaur, Indu Khatri, Nitin Kumar Singh, Sudeep Kumar Maurya, Srikrishna Subramanian, Arunanshu Behera, Divya Dahiya, Javed N Agrewala and Shanmugam Mayilraj
  
  Coagulase-negative Staphylococci (CNS) are known to cause distinct types of infections in humans like endocarditis and urinary tract infections (UTI). Surprisingly, there is a lack of genome analysis data in literature against CNS particularly of human origin. In light of this, we performed genome mining and comparative genomic analysis of CNS strains Staphylococcus cohnii subsp. cohnii strain GM22B2, Staphylococcus equorum subsp. strain equorum G8HB1, Staphylococcus pasteuri strain BAB3 isolated from gall bladder and Staphylococcus haemolyticus strain 1HT3, Staphylococcus warneri strain 1DB1 isolated from colon. We identified 29% of shared virulence determinants in the CNS strains which involved resistance to antibiotics and toxic compounds, bacteriocins and ribosomally synthesized peptides, adhesion, invasion, intracellular resistance, prophage regions, pathogenicity islands. 10 uni.. View More»
  DOI: 10.4172/2153-0602.1000192

  Abstract PDF