Journal of Data Mining in Genomics & Proteomics

Gerard Tromp

Publications

• Short Communication
  Node-Oriented Workflow (NOW): A Command Template Workflow Management Tool for High Throughput Data Analysis Pipelines
  Author(s): Eric B. Lipsky, Brian R. King and Gerard TrompEric B. Lipsky, Brian R. King and Gerard Tromp
  
  Next generation sequencing (NGS) systems produce vast quantities of data that require substantial computational resources for typical analysis tasks. In addition, data that are generated by different NGS systems are not homogeneous. Moreover, there are an overwhelming number of tools available for performing typical tasks. Managing NGS workflows involves writing custom scripts that quickly grow in complexity, often resulting in unwieldy workflows that underutilize typical high performance compute resources, and increase the demands of the staff managing these workflows. We present Node-Oriented Workflow (NOW), a dynamic command template workflow engine for high performance distributed computing (HPC) systems. Our system provides a simple-to-use browserbased front end for designing and.. View More»
  DOI: 10.4172/2153-0602.1000159

  Abstract PDF